Overview

The ANASFV project focuses on analyzing whole genome of African Swine Fever Virus (ASFV). It includes genome assembly, polishing, genome quality assessment, recombination detection, and phylogenetic analysis. It contains 4 available tasks:

• mapping_assembly.py: Using nanopore reads of PCR-amplified ASFV to assemble a genome (This task is optional. If you have already obtained an assembled genome by other methods, you can apply Tasks 2, 3, and 4).

• completeness.py: Assessing the quality of an assembled ASFV genome.

• recombination_test.py: Checking for any evidence of recombination between genotypes I and II.

• make_tree.py: Constructing a phylogenetic tree using CDS.